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Table 1 Phylogenetic lineages containing human Hox cluster genes

From: PhyloPat: phylogenetic pattern analysis of eukaryotic genes

ppid sc ce ag aa dm cs ci tn tr ga dr xt gg md bt cf rn mm mm pt hs pattern gene
PP022041 0 1 1 1 1 1 1 3 6 5 6 2 2 3 3 2 3 3 2 2 2 011111111111111111111 MSX1, 2
PP024984 0 0 1 0 0 0 0 1 1 1 1 1 0 0 1 1 1 1 1 1 1 001000011111001111111 C4
PP027791 0 0 1 1 1 0 0 2 3 3 4 3 2 3 3 3 3 3 3 3 3 001110011111111111111 TLX1, 2, 3
PP049478 0 0 0 0 0 0 2 2 1 1 5 3 1 1 2 3 2 2 2 2 3 000000111111111111111 B8, C8, D8
PP053824 0 0 0 0 0 0 0 1 1 1 2 0 0 1 0 1 0 1 0 1 1 000000011110010101011 D11
PP053827 0 0 0 0 0 0 0 2 2 2 1 1 1 1 1 1 1 1 1 1 1 000000011111111111111 A10
PP053828 0 0 0 0 0 0 0 2 1 1 1 1 2 1 2 1 2 2 2 2 2 000000011111111111111 C13, D13
PP053829 0 0 0 0 0 0 0 6 3 3 4 1 1 2 2 2 2 2 2 2 2 000000011111111111111 A1, B1
PP053830 0 0 0 0 0 0 0 1 1 1 1 0 0 1 0 1 1 1 1 1 1 000000011110010111111 B4
PP053832 0 0 0 0 0 0 0 2 1 1 1 1 0 1 1 1 1 1 1 1 1 000000011111011111111 A5
PP053833 0 0 0 0 0 0 0 2 1 1 1 0 1 1 1 1 1 1 0 1 1 000000011110111111011 B2
PP053834 0 0 0 0 0 0 0 3 1 1 0 1 0 1 1 1 1 1 1 1 1 000000011101011111111 D3
PP053835 0 0 0 0 0 0 0 2 1 1 1 0 1 1 1 1 1 1 1 0 1 000000011110111111101 A9
PP053836 0 0 0 0 0 0 0 2 1 1 1 1 1 1 1 1 1 1 1 1 1 000000011111111111111 A3
PP053838 0 0 0 0 0 0 0 2 1 1 1 0 1 0 1 1 1 1 1 1 1 000000011110101111111 C12
PP053839 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 1 1 000000011111111110111 D4
PP053840 0 0 0 0 0 0 0 2 1 1 1 1 2 0 1 0 1 1 1 0 1 000000011111101011101 C11
PP053842 0 0 0 0 0 0 0 4 3 2 2 1 1 1 1 1 1 1 1 1 1 000000011111111111111 A13
PP053844 0 0 0 0 0 0 0 3 2 2 3 1 0 1 1 1 1 1 1 1 1 000000011111011111111 B5
PP053845 0 0 0 0 0 0 0 2 1 1 1 1 1 1 1 1 1 1 0 1 1 000000011111111111011 B3
PP053846 0 0 0 0 0 0 0 2 1 1 2 1 1 1 1 1 1 1 1 1 1 000000011111111111111 D10
PP053847 0 0 0 0 0 0 0 2 2 2 1 1 1 1 1 1 1 1 1 1 1 000000011111111111111 A2
PP053849 0 0 0 0 0 0 0 3 4 1 5 1 1 3 2 3 3 3 3 2 3 000000011111111111111 A6, B6, C6
PP053853 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 1 1 0 1 1 000000011101111111011 A4
PP053854 0 0 0 0 0 0 0 3 2 2 5 2 2 2 3 1 3 3 2 1 3 000000011111111111111 B9, C9, D9
PP053858 0 0 0 0 0 0 0 1 1 1 2 0 0 1 1 1 1 1 1 1 1 000000011110011111111 A11
PP070659 0 0 0 0 0 0 0 0 0 1 2 1 2 1 2 2 2 2 2 2 2 000000000111111111111 A7, B7
PP075622 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 1 1 1 1 1 000000000010001111111 C5
PP084287 0 0 0 0 0 0 0 0 0 0 0 1 1 0 1 1 1 1 1 1 1 000000000001101111111 C10
PP085049 0 0 0 0 0 0 0 0 0 0 0 1 0 1 1 0 1 1 1 1 1 000000000001011011111 D1
PP087941 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 0 1 1 1 1 1 000000000000111011111 D12
PP089685 0 0 0 0 0 0 0 0 0 0 0 0 1 1 1 1 1 1 1 1 1 000000000000111111111 B13