Table 1 Phylogenetic lineages containing human Hox cluster genes
From: PhyloPat: phylogenetic pattern analysis of eukaryotic genes
ppid | sc | ce | ag | aa | dm | cs | ci | tn | tr | ga | dr | xt | gg | md | bt | cf | rn | mm | mm | pt | hs | pattern | gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
PP022041 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 3 | 6 | 5 | 6 | 2 | 2 | 3 | 3 | 2 | 3 | 3 | 2 | 2 | 2 | 011111111111111111111 | MSX1, 2 |
PP024984 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 001000011111001111111 | C4 |
PP027791 | 0 | 0 | 1 | 1 | 1 | 0 | 0 | 2 | 3 | 3 | 4 | 3 | 2 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 3 | 001110011111111111111 | TLX1, 2, 3 |
PP049478 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 1 | 1 | 5 | 3 | 1 | 1 | 2 | 3 | 2 | 2 | 2 | 2 | 3 | 000000111111111111111 | B8, C8, D8 |
PP053824 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 2 | 0 | 0 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 1 | 000000011110010101011 | D11 |
PP053827 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111111111111 | A10 |
PP053828 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 1 | 2 | 1 | 2 | 1 | 2 | 2 | 2 | 2 | 2 | 000000011111111111111 | C13, D13 |
PP053829 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 6 | 3 | 3 | 4 | 1 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 000000011111111111111 | A1, B1 |
PP053830 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011110010111111 | B4 |
PP053832 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111011111111 | A5 |
PP053833 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 000000011110111111011 | B2 |
PP053834 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011101011111111 | D3 |
PP053835 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 000000011110111111101 | A9 |
PP053836 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111111111111 | A3 |
PP053838 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 0 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011110101111111 | C12 |
PP053839 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 000000011111111110111 | D4 |
PP053840 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 1 | 2 | 0 | 1 | 0 | 1 | 1 | 1 | 0 | 1 | 000000011111101011101 | C11 |
PP053842 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 3 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111111111111 | A13 |
PP053844 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 2 | 2 | 3 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111011111111 | B5 |
PP053845 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 000000011111111111011 | B3 |
PP053846 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111111111111 | D10 |
PP053847 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 2 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011111111111111 | A2 |
PP053849 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 4 | 1 | 5 | 1 | 1 | 3 | 2 | 3 | 3 | 3 | 3 | 2 | 3 | 000000011111111111111 | A6, B6, C6 |
PP053853 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 0 | 1 | 1 | 000000011101111111011 | A4 |
PP053854 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 2 | 2 | 5 | 2 | 2 | 2 | 3 | 1 | 3 | 3 | 2 | 1 | 3 | 000000011111111111111 | B9, C9, D9 |
PP053858 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 2 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000011110011111111 | A11 |
PP070659 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 2 | 1 | 2 | 1 | 2 | 2 | 2 | 2 | 2 | 2 | 2 | 000000000111111111111 | A7, B7 |
PP075622 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000000010001111111 | C5 |
PP084287 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000000001101111111 | C10 |
PP085049 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 000000000001011011111 | D1 |
PP087941 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 0 | 1 | 1 | 1 | 1 | 1 | 000000000000111011111 | D12 |
PP089685 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 000000000000111111111 | B13 |