Figure 4
From: Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
Performance of pairSCFG algorithm on test sets binned by percent identity. Panel A shows the alignment accuracy for the unconstrained pairSCFG (blue squares; dotted line), the constrained pairSCFG (black circles; solid line), and clustalW (red triangles; dashed line). Panel B shows the base pair sensitivity of the unconstrained pairSCFG (blue squares; dotted line) and constrained pairSCFG (black circles; solid line). For reference, the performance of both G s (dashed green line) and mfold (dashed red line) on this set of sequences is shown. In both graphs, the performance of the constrained pairSCFG is only given for percent identity bins where at least two alignments contained valid pins. All comparisons are relative to the Rfam v7.0 seed alignments.