From: Efficient pairwise RNA structure prediction and alignment using sequence alignment constraints
Sequence Pair | CPU (sec) | RAM (MB) |
---|---|---|
unconstrained pairSCFG | ||
RD0260 vs RE6781 tRNAs | 718 | 285 |
M16173 vs X02128 5S | 22902 | 1465 |
constrained pairSCFG (post 0.95; W = 20) | ||
RD0260 vs RE6781 tRNAs | 31 | 64 |
M16173 vs X02128 5S | 347 | 248 |
Dynalign ( = 15; gap = 0.4) | ||
RD0260 vs RE6781 tRNAs | 1761 | 33 |
M16173 vs X02128 5S | 4928 | 67 |
Stemloc (-na 100 -nf 1000) | ||
RD0260 vs RE6781 tRNAs | 6 | 85 |
M16173 vs X02128 5S | 18 | 193 |
PMcomp (-p -noLP for RNAfold) | ||
RD0260 vs RE6781 tRNAs | 19 | 52 |
M16173 vs X02128 5S | 33 | 142 |
FOLDALIGN (-max_diff 25 -global -score_matrix global. fmat) | ||
RD0260 vs RE6781 tRNAs | 25 | 77 |
M16173 vs X02128 5S | 87 | 280 |