Table 3 Semantic features (SGD8 dataset clusters). Top 10 terms of semantic features representing the eleven clusters obtained for the SGD8 dataset. An average semantic feature has been calculated from the characteristic features in each cluster obtained by two-way hierarchical clustering.
From: Discovering semantic features in the literature: a foundation for building functional associations
A. DNA repair and replication | repair, dna, replic, telomere, checkpoint, pcna, damag, dsb, recombin, mismatch |
|---|---|
B. Lipid metabolism | sterol, fatti, lipid, ergosterol, synthetas, synthas, biosynthesi, actin, heat, sphingolipid |
C. Response to stress | mitochondri, hsp70, ubiquitin, dna, oxid, chaperon, shock, rad52, heat, camp |
D. Transport I | transport, membran, vesicle, golgi, outer, receptor, copii, export, snare, vacuolar |
E. Transport II | vacuolar, v-atpas, membran, vacuol, vesicl, transport, golgi, glucose, transloc, cytosol |
F. Transport III | transport, uptake, vesicle, vacuolar, vacuole, membran, permeas, nitrogen, ubiquitin, glucos |
G. Mitochondria | mitochondria, mitochondri, mitochondrion, inner, ino1, matur, translat, transles, membrane-associ, membran |
H. Gene expression (chromatin) | nucleosom, histon, swi, snf, chromatin, remodel, arrai, transcript, silenc, acetyl |
I. Cell cycle | spindl, cyclin, kinetochor, checkpoint, anaphase, mitosi, mitot, sister, chromosom, replic |
J. mRNA and protein biosynthesis | translat, mrna, ribosom, rna, poli, swi, snf, elong, transcript, atpas |
K. Cell morphology response | actin, kinas, wall, phosphoryl, pheromone, mate, phosphates, cytoskeleton, glucose, polar |