Figure 5

Comparison of HMMs built using an older protein sequence database for iterative construction ("old db") with those built using a current sequence database ("new db"), presented as a coverage vs. error plot. Results are colored similarly for corresponding model types, with the results based on the older database in a lighter color. A different version of the HMMER software was also used for the two result sets; details of model types and construction are provided in the text. Iterative parameters used for construction of all models were from PS1 (Table 2).