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Table 3 Comparison of known ESE motifs which are located at the splice acceptor site of the exon-intron boundaries

From: A machine learning strategy to identify candidate binding sites in human protein-coding sequence

Consensus

SR Protein or Gene

p-value

Status

Reference

ctcktcy

SRp20

0.922

 

Schaal et al (1999)

rgaccgg

SC35

0.054

 

Schaal et al (1999)

agagcagg

ASF/SF2

0.135

 

Zheng et al (1999)

rgackacgay

9G8

0.352

 

Tian et al (1999)

aagaagaa

Tra2 (beta)

0.015

+

Tacke et al (1995)

tcaaca

Tra2

0.904

 

Lynch et al (1996)

gaagaa

Tra2 (beta)

0.010

+

Tacke et al (1999)

gacgacgag

Pu1

0.111

 

Bourgeois (1999)

gatgaagag

Pu2

0.183

 

Bourgeois (1999)

  1. Comparison between the eponine motif model and known ESE motifs which are located in introns at the splice acceptor site of the exon-intron boundaries. A '+' in the status column indicates a significant p-value <= 0.05.
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BMC Bioinformatics

ISSN: 1471-2105

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