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Figure 3 | BMC Bioinformatics

Figure 3

From: Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs

Figure 3

Graphs of enlarged IRs containing characterized promoter sequences presented in Figure 2. The green arrow represents the characterized promoter sequence. The start codon of the gene of interest is located at "0" on the X-axis of the enlarged IR. The Y-axis coordinate shows the calculated score. The threshold of each region is shown (dashed grey line). The sequence of all candidate promoters above the threshold is shown (5 merged overlapping -35 boxes from the different allowed spacings along with the shared -10 box). (A) The general synthetic matrix (#45012859) used to calculate the scores presented in the graphs. The name of the gene located downstream of the selected enlarged IR is indicated in each graph. E. coli (B), B. subtilis (C) and M. tuberculosis (D). Scores obtained for the full E. coli rpoB coding sequence were also plotted.

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