From: MICA: desktop software for comprehensive searching of DNA databases
Query | Chromosome 1 | Human Genome | ||
---|---|---|---|---|
 | Time (sec) | Hits | Time (sec) | Hits |
Nondegenerate 3-mers | 1.1 [0.80] | 6.96 × 106 | 14.8 | 8.90 × 107 |
Nondegenerate 4-mers | 0.28 [0.16] | 1.69 × 106 | 4.2 | 2.17 × 107 |
Nondegenerate 6-mers | 0.043 [0.0032] | 160,702 | 0.96 | 2.05 × 106 |
Nondegenerate 8-mers | 0.079 [0.011] | 16,631 | 1.6 | 213,099 |
Nondegenerate 15-mers | 0.088 [0.0074] | 1.39 | 1.8 | 5.81 |
Nondegenerate 30-mers | 0.13 [0.0076] | 1.03 | 1.8 | 1.24 |
Nondegenerate 100-mers | 0.12 [0.0050] | 1.01 | 1.7 | 1.02 |
Nondegenerate 1000-mers | 0.094 [0.0023] | 1.00 | 1.3 | 1.00 |
Alu 30-mer fragment | 0.12 [0.0055] | 1,130 | 2.5 | 14,041 |
GDGCHC (Bsp 1286I) | 0.13 [0.031] | 398,999 | 2.5 | 4,776,086 |
GCCNNNNNGGC (Bgl I) | 0.44 [0.15] | 44,761 | 6.2 | 520,776 |
ACNNNNGTAYC (Bae I) | 1.40 [0.37] | 20,243 | 21.1 | 259,837 |