Table 4 Accuracy of RNA secondary structure prediction. Comparison of sensitivities and PPVs for the Pfold program, its phylo-SCFG running on xrate with its original rates, and its phylo-SCFG running on xrate with rates estimated from Rfam by the phylo-EM algorithm.
From: XRate: a fast prototyping, training and annotation tool for phylo-grammars
| Â | Sensitivity | PPV |
|---|---|---|
Pfold | 45.0% | 58.3% |
xrate emulating Pfold | 44.4% | 61.7% |
xrate trained on Rfam | 42.8% | 58.2% |