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Table 4 Accuracy of RNA secondary structure prediction. Comparison of sensitivities and PPVs for the Pfold program, its phylo-SCFG running on xrate with its original rates, and its phylo-SCFG running on xrate with rates estimated from Rfam by the phylo-EM algorithm.

From: XRate: a fast prototyping, training and annotation tool for phylo-grammars

  Sensitivity PPV
Pfold 45.0% 58.3%
xrate emulating Pfold 44.4% 61.7%
xrate trained on Rfam 42.8% 58.2%