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Figure 2 | BMC Bioinformatics

Figure 2

From: QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

Figure 2

Scoring rules for SNP confidence scores. The SNP confidence score is the smaller one of bi-allele confidence scores. Rectangles in black and white represent low quality regions (LQ) and high quality region (HQ) respectively. The confidence scores for each allele are as follows: 5 if the allele occurs in more than one HQ; 4 if in one HQ and at least two LQ; 3 if in more than 3 LQ; 2 if in one HQ and one LQ, or in 3 LQ; 1 if in 2 LQ, otherwise 0.

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