QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

Table 1 Relationship of the number of haplotypes and the number of clusters derived from potato variety "Kennebec".

No. of haplotypes in one cluster	No. of clusters^a	No. of clusters with ahap^b
2	1478	1924
3	679	680
4	452	347
5	253	99
6	131	24
7	51	5
8	25	0
more than 8	12	2
total clusters with SNPs	3081	3081
clusters with at most 4 haplotypes	2609(84.7%)	2951(95.8%)

^a all haplotypes in clusters were counted; ^b when clusters contained at least 2 haplotypes with at least 2 members, only these haplotypes were counted.

ISSN: 1471-2105