TY - JOUR AU - Ashburner, M. AU - Ball, C. A. AU - Blake, J. A. AU - Botstein, D. AU - Butler, H. AU - Cherry, J. M. AU - Davis, A. P. AU - Dolinski, K. AU - Dwight, S. S. AU - Eppig, J. T. PY - 2000 DA - 2000// TI - Gene ontology: tool for the unification of biology. The Gene Ontology Consortium JO - Nat Genet VL - 25 UR - https://doi.org/10.1038/75556 DO - 10.1038/75556 ID - Ashburner2000 ER - TY - JOUR AU - Cherry, J. M. AU - Adler, C. AU - Ball, C. AU - Chervitz, S. A. AU - Dwight, S. S. AU - Hester, E. T. AU - Jia, Y. AU - Juvik, G. AU - Roe, T. AU - Schroeder, M. PY - 1998 DA - 1998// TI - SGD: Saccharomyces Genome Database JO - Nucleic Acids Res VL - 26 UR - https://doi.org/10.1093/nar/26.1.73 DO - 10.1093/nar/26.1.73 ID - Cherry1998 ER - TY - STD TI - The FlyBase database of the Drosophila Genome Projects and community literature. The FlyBase ConsortiumNucleic Acids Res 1999, 27(1):85–88. 10.1093/nar/27.1.85 ID - ref3 ER - TY - JOUR AU - Blake, J. A. AU - Richardson, J. E. AU - Bult, C. J. AU - Kadin, J. A. AU - Eppig, J. T. PY - 2002 DA - 2002// TI - The Mouse Genome Database (MGD): the model organism database for the laboratory mouse JO - Nucleic Acids Res VL - 30 UR - https://doi.org/10.1093/nar/30.1.113 DO - 10.1093/nar/30.1.113 ID - Blake2002 ER - TY - JOUR AU - Stein, L. AU - Sternberg, P. AU - Durbin, R. AU - Thierry-Mieg, J. AU - Spieth, J. PY - 2001 DA - 2001// TI - WormBase: network access to the genome and biology of Caenorhabditis elegans JO - Nucleic Acids Res VL - 29 UR - https://doi.org/10.1093/nar/29.1.82 DO - 10.1093/nar/29.1.82 ID - Stein2001 ER - TY - JOUR AU - Liu, H. AU - Hu, Z. Z. AU - Wu, C. H. PY - 2005 DA - 2005// TI - DynGO: a tool for visualizing and mining of Gene Ontology and its associations JO - BMC Bioinformatics VL - 6 UR - https://doi.org/10.1186/1471-2105-6-201 DO - 10.1186/1471-2105-6-201 ID - Liu2005 ER - TY - JOUR AU - Al-Shahrour, F. AU - Diaz-Uriarte, R. AU - Dopazo, J. PY - 2004 DA - 2004// TI - FatiGO: a web tool for finding significant associations of Gene Ontology terms with groups of genes JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/btg455 DO - 10.1093/bioinformatics/btg455 ID - Al-Shahrour2004 ER - TY - JOUR AU - Berriz, G. F. AU - White, J. V. AU - King, O. D. AU - Roth, F. P. PY - 2003 DA - 2003// TI - GoFish finds genes with combinations of Gene Ontology attributes JO - Bioinformatics VL - 19 UR - https://doi.org/10.1093/bioinformatics/btg088 DO - 10.1093/bioinformatics/btg088 ID - Berriz2003 ER - TY - JOUR AU - Boyle, E. I. AU - Weng, S. AU - Gollub, J. AU - Jin, H. AU - Botstein, D. AU - Cherry, J. M. AU - Sherlock, G. PY - 2004 DA - 2004// TI - GO::TermFinder – open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes JO - Bioinformatics VL - 20 UR - https://doi.org/10.1093/bioinformatics/bth456 DO - 10.1093/bioinformatics/bth456 ID - Boyle2004 ER - TY - JOUR AU - Yu, U. AU - Choi, Y. J. AU - Choi, J. K. AU - Kim, S. PY - 2005 DA - 2005// TI - TO-GO: a Java-based Gene Ontology navigation environment JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti560 DO - 10.1093/bioinformatics/bti560 ID - Yu2005 ER - TY - JOUR AU - Zeeberg, B. R. AU - Feng, W. AU - Wang, G. AU - Wang, M. D. AU - Fojo, A. T. AU - Sunshine, M. AU - Narasimhan, S. AU - Kane, D. W. AU - Reinhold, W. C. AU - Lababidi, S. PY - 2003 DA - 2003// TI - GoMiner: a resource for biological interpretation of genomic and proteomic data JO - Genome Biol VL - 4 UR - https://doi.org/10.1186/gb-2003-4-4-r28 DO - 10.1186/gb-2003-4-4-r28 ID - Zeeberg2003 ER - TY - JOUR AU - Zhou, M. AU - Cui, Y. PY - 2004 DA - 2004// TI - GeneInfoViz: constructing and visualizing gene relation networks JO - In Silico Biol VL - 4 ID - Zhou2004 ER - TY - STD TI - The Gene Ontology webpage[http://www.geneontology.org] UR - http://www.geneontology.org ID - ref13 ER - TY - STD TI - OpenJGraph[http://openjgraph.sourceforge.net] UR - http://openjgraph.sourceforge.net ID - ref14 ER - TY - JOUR AU - Benjamini, Y. AU - Yekutieli, D. PY - 2001 DA - 2001// TI - The control of the false discovery rate in multiple testing under dependency JO - Annals of Statistics VL - 29 UR - https://doi.org/10.1214/aos/1013699998 DO - 10.1214/aos/1013699998 ID - Benjamini2001 ER - TY - STD TI - GOLEM home page[http://function.princeton.edu/GOLEM] UR - http://function.princeton.edu/GOLEM ID - ref16 ER - TY - JOUR AU - Spellman, P. T. AU - Sherlock, G. AU - Zhang, M. Q. AU - Iyer, V. R. AU - Anders, K. AU - Eisen, M. B. AU - Brown, P. O. AU - Botstein, D. AU - Futcher, B. PY - 1998 DA - 1998// TI - Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization JO - Mol Biol Cell VL - 9 UR - https://doi.org/10.1091/mbc.9.12.3273 DO - 10.1091/mbc.9.12.3273 ID - Spellman1998 ER -