Table 5 Times for all-against-all sequence comparisons of the ASTRAL SCOP PDB095 set.
From: Testing statistical significance scores of sequence comparison methods with structure similarity
Method | Time |
|---|---|
Paracel SW e-value | 3 hours * |
Biofacet SW Z-score | multiple days |
NCBI BLAST e-value | 15 minutes |
FASTA e-value | 40 minutes |
SSEARCH e-value | 5 hours, 49 minutes |
ParAlign SW e-value | 47 minutes |