Table 3 Overlap with PhastCons and MAGE genes
From: CpGcluster: a distance-based algorithm for CpG-island detection
Overlap with TSS of MAGE genes | % of overlap with | |||
|---|---|---|---|---|
Program | #CGI | Average length ± SD | Alus | PhastCons |
newcpgreport | 2 | 271.0 ± 18.4 | 19.49 | 23.73 |
CpGProD | 3 | 1,314.3 ± 525.1 | 23.40 | 13.31 |
CpGIS | 3 | 800.0 ± 243.3 | 10.52 | 20.59 |
CpGIE | 3 | 1,093.0 ± 476.1 | 23.99 | 14.00 |
CpGED | 2 | 730.5 ± 320.3 | 15.32 | 15.82 |
CpGcluster | 8 | 258.3 ± 100.8 | 6.79 | 28.53 |