From: CpGcluster: a distance-based algorithm for CpG-island detection
P-values | |||||||||
---|---|---|---|---|---|---|---|---|---|
Class* | # CpG islands | Length ± SD | CpG Density ± SD | Obs/Exp Ratio ± SD | %GG ± SD | P25 | Median | P75 | PhastCons overlap (%) |
Human: | |||||||||
L1 | 6,775 | 672.3 ± 398.7 | 0.10 ± 0.02 | 0.89 ± 0.13 | 68.4 ± 5.7 | 1.43E-66 | 1.53E-40 | 8.43E-23 | 29.73 |
L2 | 16,709 | 256.3 ± 213.1 | 0.09 ± 0.04 | 0.89 ± 0.23 | 64.6 ± 7.8 | 2.61E-14 | 5.42E-09 | 7.27E-07 | 21.56 |
L3 | 29,386 | 230.5 ± 173.0 | 0.08 ± 0.04 | 0.84 ± 0.27 | 63.1 ± 7.1 | 1.17E-10 | 9.94E-08 | 1.86E-06 | 14.97 |
L4 | 3,880 | 247.8 ± 212.8 | 0.09 ± 0.04 | 0.85 ± 0.23 | 65.8 ± 7.3 | 2.12E-12 | 3.43E-08 | 1.31E-06 | 28.04 |
NG | 140,977 | 266.0 ± 238.2 | 0.09 ± 0.04 | 0.85 ± 0.27 | 63.5 ± 7.5 | 1.44E-12 | 2.43E-08 | 1.25E-06 | 14.06 |
Mouse: | |||||||||
L1 | 8,090 | 745.7 ± 373.8 | 0.09 ± 0.02 | 0.83 ± 0.13 | 65.3 ± 5.2 | 2.50E-64 | 1.20E-40 | 7.20E-24 | 35.69 |
L2 | 10,219 | 302.7 ± 257.4 | 0.09 ± 0.07 | 0.92 ± 0.38 | 62.0 ± 9.3 | 8.60E-15 | 9.15E-09 | 8.69E-07 | 38.80 |
L3 | 18,734 | 230.6 ± 190.7 | 0.10 ± 0.09 | 0.97 ± 0.45 | 61.4 ± 10.4 | 9.91E-10 | 2.04E-07 | 2.29E-06 | 34.99 |
L4 | 3,305 | 284.6 ± 232.6 | 0.08 ± 0.06 | 0.87 ± 0.35 | 61.3 ± 8.3 | 1.61E-11 | 7.17E-08 | 1.58E-06 | 49.87 |
NG | 75,419 | 284.0 ± 257.6 | 0.10 ± 0.09 | 0.98 ± 0.45 | 61.1 ± 10.5 | 2.54E-12 | 2.92E-08 | 1.29E-06 | 20.45 |