Skip to main content
Figure 6 | BMC Bioinformatics

Figure 6

From: Genepi: a blackboard framework for genome annotation

Figure 6

Declaration of the blackboard implementing thestrategy depicted on Figure 5. In order to instantiate a blackboard implementing an annotation strategy, the user just has to write an XML configuration file. This file contains two parts: one (1) for the declaration of the blackboard layers and the other (2) for the definition of the KSs. In this example, the blackboard contains seven layers (out of which three correspond to individual genomic features: CDS, DBHITS and ENZGENE). For clarity, the figure just displays an excerpt of the actual listing (the complete version can be found in the distribution of Genepi).

Back to article page