Figure 1

Example result. Plot showing the clustering scores from our algorithm for each locus across a region, using the HQC score (top). The horizontal lines indicate "positive" significance, "strong" significance, and "very strong" significance, respectively (see main text). P-values, obtained by a permutation test (1000 replicates), are shown below, where the bottommost line shows 5% significance and the topmost line 1% significance. At the bottom, the corresponding single marker association is shown, where the two lines again show 5% and 1% significance.