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Table 6 Error rates (top1, top>3) for the remote homology detection problem.

From: Building multiclass classifiers for remote homology detection and fold recognition

   sf95 sf40
   top1 top3 top1 top3
Two-Level Approaches Without Hierarchy Information
  Scaling 7.5 2.6 10.1 3.8
SVM-Struct Scale & Shift 9.0 2.0 10.1 3.4
  Crammer Singer 8.1 1.7 9.2 2.5
Two-Level Approaches With Fold-level Nodes
  Scaling 4.6 0.9 6.3 1.7
SVM-Struct Scale & Shift 4.0 0.9 5.0 1.7
  Crammer Singer 6.6 2.6 5.0 1.7
Two-Level Approaches With Fold-level and Class-Level Nodes
  Scaling 5.2 1.7 5.5 1.7
SVM-Struct Scale & Shift 5.8 2.3 4.2 2.1
  Crammer Singer 6.6 2.0 5.0 1.7
  1. The results shown in the table are optimized for the balanced loss function.