A framework for protein structure classification and identification of novel protein structures

BMC Bioinformatics

Table 4 The clustering effectiveness at the SCOP family, superfamily, and fold levels

	SCOP Classes (A)	MCL Clusters (B)	# of common clusters/classes (C)	# of correctly labeled domains in (C)
Family	320	358	301	822 (88%)
Superfamily	260	327	234	731 (78%)
Fold	200	318	191	670 (72%)

This table shows the result of clustering 934 unclassified domains at the SCOP family, superfamily, and fold levels. Column 2 shows the number of SCOP families, superfamilies, and folds that these 934 domains are spread across. Column 3 shows the number of automatically generated clusters at each SCOP level. Column 4 shows the number of common clusters/SCOP classes that were correctly mapped. Column 5 shows the number of actual domains in the cluster that had the same label as the corresponding SCOP class.

ISSN: 1471-2105