Table 1 Results of affycomp comparative benchmark.
Metric | Optimal Value | Full refRMA | Classic RMA | MAS 5.0 | MAS 5.0+32 |
|---|---|---|---|---|---|
Null log-fc IQR | 0.00 | 0.20 | 0.13 | 0.47 | 0.34 |
Null log-fc 99% | 0.00 | 0.51 | 0.29 | 2.83 | 1.30 |
Null log-fc 99.9% | 0.00 | 0.74 | 0.40 | 4.01 | 1.81 |
Low AUC | 1.00 | 0.20 | 0.45 | 0.00 | 0.03 |
Med AUC | 1.00 | 0.53 | 0.87 | 0.00 | 0.01 |
High AUC | 1.00 | 0.67 | 0.92 | 0.00 | 0.01 |
Weighted Avg AUC | 1.00 | 0.28 | 0.55 | 0.00 | 0.03 |
Low slope | 1.00 | 0.27 | 0.25 | 0.61 | 0.42 |
Med slope | 1.00 | 0.68 | 0.69 | 0.70 | 0.67 |
High slope | 1.00 | 0.87 | 0.82 | 0.81 | 0.81 |