From: Evaluating different methods of microarray data normalization
Percentage of DEG | Sinusoid | Banana | Mixed | |||||||
---|---|---|---|---|---|---|---|---|---|---|
Method | 25% Quantile | Median | 75% Quantile | 25% Quantile | Median | 75% Quantile | 25% Quantile | Median | 75% Quantile | |
5% | Loess | 0.00038 | 0.00039 | 0.00040 | 0.00081 | 0.00087 | 0.00094 | 0.04633 | 0.04639 | 0.04648 |
Splines | 0.00035 | 0.00036 | 0.00037 | 0.00079 | 0.00086 | 0.00092 | 0.04658 | 0.04665 | 0.04674 | |
Wavelets | 0.00033 | 0.00034 | 0.00035 | 0.00115 | 0.00121 | 0.00129 | 0.04643 | 0.04650 | 0.04660 | |
Kernel | 0.03781 | 0.03782 | 0.03783 | 0.16417 | 0.16453 | 0.16513 | 0.17428 | 0.17436 | 0.17447 | |
SVR | 0.00031 | 0.00032 | 0.00033 | 0.00080 | 0.00087 | 0.00092 | 0.04527 | 0.04534 | 0.04544 | |
10% | Loess | 0.00146 | 0.00153 | 0.00168 | 0.00145 | 0.00156 | 0.00167 | 0.04733 | 0.04748 | 0.04758 |
Splines | 0.00142 | 0.00149 | 0.00160 | 0.00147 | 0.00157 | 0.00168 | 0.04756 | 0.04767 | 0.04779 | |
Wavelets | 0.00140 | 0.00147 | 0.00159 | 0.00160 | 0.00170 | 0.00182 | 0.04725 | 0.04736 | 0.04748 | |
Kernel | 0.02662 | 0.03454 | 0.03789 | 0.23086 | 0.23135 | 0.23245 | 0.18441 | 0.19003 | 0.19176 | |
SVR | 0.00126 | 0.00133 | 0.00144 | 0.00142 | 0.00154 | 0.00166 | 0.04678 | 0.04687 | 0.04696 | |
15% | Loess | 0.00203 | 0.00217 | 0.00234 | 0.00199 | 0.00212 | 0.00224 | 0.04963 | 0.04976 | 0.04991 |
Splines | 0.00198 | 0.00211 | 0.00223 | 0.00200 | 0.00211 | 0.00222 | 0.04987 | 0.05001 | 0.05014 | |
Wavelets | 0.00196 | 0.00209 | 0.00224 | 0.00219 | 0.00240 | 0.00257 | 0.04975 | 0.04989 | 0.05001 | |
Kernel | 0.02318 | 0.02992 | 0.03729 | 0.17578 | 0.20066 | 0.22763 | 0.18472 | 0.18898 | 0.18923 | |
SVR | 0.00178 | 0.00190 | 0.00200 | 0.00170 | 0.00180 | 0.00189 | 0.04885 | 0.04898 | 0.04912 | |
20% | Loess | 0.00260 | 0.00275 | 0.00293 | 0.00259 | 0.00272 | 0.00289 | 0.04917 | 0.04930 | 0.04944 |
Splines | 0.00254 | 0.00268 | 0.00286 | 0.00260 | 0.00270 | 0.00289 | 0.04933 | 0.04946 | 0.04961 | |
Wavelets | 0.00253 | 0.00267 | 0.00284 | 0.00289 | 0.00304 | 0.00320 | 0.04919 | 0.04933 | 0.04947 | |
Kernel | 0.02224 | 0.02819 | 0.03468 | 0.16500 | 0.17817 | 0.20385 | 0.18207 | 0.18716 | 0.19141 | |
SVR | 0.00226 | 0.00239 | 0.00255 | 0.00247 | 0.00258 | 0.00272 | 0.04839 | 0.04850 | 0.04863 | |
40% | Loess | 0.00501 | 0.00520 | 0.00545 | 0.00518 | 0.00538 | 0.00555 | 0.04980 | 0.04999 | 0.05020 |
Splines | 0.00498 | 0.00519 | 0.00539 | 0.00520 | 0.00538 | 0.00558 | 0.05002 | 0.05022 | 0.05038 | |
Wavelets | 0.00496 | 0.00517 | 0.00537 | 0.00535 | 0.00551 | 0.00572 | 0.04984 | 0.05004 | 0.05020 | |
Kernel | 0.02155 | 0.02487 | 0.02810 | 0.18250 | 0.20140 | 0.22296 | 0.17524 | 0.18072 | 0.18433 | |
SVR | 0.00446 | 0.00467 | 0.00489 | 0.00464 | 0.00483 | 0.00505 | 0.04809 | 0.04829 | 0.04860 |