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Figure 9 | BMC Bioinformatics

Figure 9

From: CGAT: a comparative genome analysis tool for visualizing alignments in the analysis of complex evolutionary changes between closely related genomes

Figure 9

Percentage identities at positions near the boundaries of the orthologous alignments calculated by various programs. For each position at both ends of the orthologous alignments ≥ 500 bp, the number of matches and mismatches were counted and the average percentage identity was calculated using a window size of 21 bp (10 bp on either side) for smoothing. Gapped sites were eliminated from the alignments for the purpose of this calculation. The pairs of genomes to be compared are the same as those shown in Figure 7. The large variability observed among the "non-sensitive" set of programs in (D) is due to a lack of alignment data.

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