TY - JOUR AU - Henzel, W. J. AU - Billeci, T. M. AU - Stults, J. T. AU - Wong, S. C. AU - Grimley, C. AU - Watanabe, C. PY - 1993 DA - 1993// TI - Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases JO - Proc Natl Acad Sci USA VL - 90 UR - https://doi.org/10.1073/pnas.90.11.5011 DO - 10.1073/pnas.90.11.5011 ID - Henzel1993 ER - TY - JOUR AU - Mann, M. AU - Hojrup, P. AU - Roepstorff, P. PY - 1993 DA - 1993// TI - Use of mass spectrometric molecular weight information to identify proteins in sequence databases JO - Biol Mass Spectrom VL - 22 UR - https://doi.org/10.1002/bms.1200220605 DO - 10.1002/bms.1200220605 ID - Mann1993 ER - TY - JOUR AU - Pappin, D. J. AU - Hojrup, P. AU - Bleasby, A. J. PY - 1993 DA - 1993// TI - Rapid identification of proteins by peptide-mass fingerprinting JO - Curr Biol VL - 3 UR - https://doi.org/10.1016/0960-9822(93)90195-T DO - 10.1016/0960-9822(93)90195-T ID - Pappin1993 ER - TY - JOUR AU - Edman, P. AU - Begg, G. PY - 1967 DA - 1967// TI - A protein sequenator JO - Eur J Biochem VL - 1 UR - https://doi.org/10.1111/j.1432-1033.1967.tb00047.x DO - 10.1111/j.1432-1033.1967.tb00047.x ID - Edman1967 ER - TY - JOUR AU - Hunt, D. F. AU - Henderson, R. A. AU - Shabanowitz, J. AU - Sakaguchi, K. AU - Michel, H. AU - Sevilir, N. AU - Cox, A. L. AU - Appella, E. AU - Engelhard, V. H. PY - 1992 DA - 1992// TI - Characterization of peptides bound to the class I MHC molecule HLA-A2.1 by mass spectrometry JO - Science VL - 255 UR - https://doi.org/10.1126/science.1546328 DO - 10.1126/science.1546328 ID - Hunt1992 ER - TY - JOUR AU - Sze, S. K. AU - Ge, Y. AU - Oh, H. AU - McLafferty, F. W. PY - 2002 DA - 2002// TI - Top-down mass spectrometry of a 29-kDa protein for characterization of any posttranslational modification to within one residue JO - Proc Natl Acad Sci USA VL - 99 UR - https://doi.org/10.1073/pnas.251691898 DO - 10.1073/pnas.251691898 ID - Sze2002 ER - TY - JOUR AU - Zhong, H. AU - Zhang, Y. AU - Wen, Z. AU - Li, L. PY - 2004 DA - 2004// TI - Protein sequencing by mass analysis of polypeptide ladders after controlled protein hydrolysis JO - Nat Biotechnol VL - 22 UR - https://doi.org/10.1038/nbt1011 DO - 10.1038/nbt1011 ID - Zhong2004 ER - TY - JOUR AU - Choudhary, J. S. AU - Blackstock, W. P. AU - Creasy, D. M. AU - Cottrell, J. S. PY - 2001 DA - 2001// TI - Interrogating the human genome using uninterpreted mass spectrometry data JO - Proteomics VL - 1 UR - https://doi.org/3.0.CO;2-N DO - 3.0.CO;2-N ID - Choudhary2001 ER - TY - JOUR AU - Kuster, B. AU - Mortensen, P. AU - Andersen, J. S. AU - Mann, M. PY - 2001 DA - 2001// TI - Mass spectrometry allows direct identification of proteins in large genomes JO - Proteomics VL - 1 UR - https://doi.org/3.0.CO;2-R DO - 3.0.CO;2-R ID - Kuster2001 ER - TY - JOUR AU - Perkins, D. N. AU - Pappin, D. J. AU - Creasy, D. M. AU - Cottrell, J. S. PY - 1999 DA - 1999// TI - Probability-based protein identification by searching sequence databases using mass spectrometry data JO - Electrophoresis VL - 20 UR - https://doi.org/3.0.CO;2-2 DO - 3.0.CO;2-2 ID - Perkins1999 ER - TY - JOUR AU - MacCoss, M. J. AU - Wu, C. C. AU - Yates, J. R. PY - 2002 DA - 2002// TI - Probability-based validation of protein identifications using a modified SEQUEST algorithm JO - Anal Chem VL - 74 UR - https://doi.org/10.1021/ac025826t DO - 10.1021/ac025826t ID - MacCoss2002 ER - TY - JOUR AU - Giddings, M. C. AU - Shah, A. A. AU - Gesteland, R. AU - Moore, B. PY - 2003 DA - 2003// TI - Genome-based peptide fingerprint scanning JO - Proc Natl Acad Sci USA VL - 100 UR - https://doi.org/10.1073/pnas.0136893100 DO - 10.1073/pnas.0136893100 ID - Giddings2003 ER - TY - JOUR AU - Arthur, J. W. AU - Wilkins, M. R. PY - 2004 DA - 2004// TI - Using proteomics to mine genome sequences JO - J Proteome Res VL - 3 UR - https://doi.org/10.1021/pr034056e DO - 10.1021/pr034056e ID - Arthur2004 ER - TY - JOUR AU - Parker, K. C. PY - 2002 DA - 2002// TI - Scoring methods in MALDI peptide mass fingerprinting: ChemScore, and the ChemApplex program JO - J Am Soc Mass Spectrom VL - 13 UR - https://doi.org/10.1016/S1044-0305(01)00320-8 DO - 10.1016/S1044-0305(01)00320-8 ID - Parker2002 ER - TY - JOUR AU - Norbeck, A. D. AU - Monroe, M. E. AU - Adkins, J. N. AU - Anderson, K. K. AU - Daly, D. S. AU - Smith, R. D. PY - 2005 DA - 2005// TI - The utility of accurate mass and LC elution time information in the analysis of complex proteomes JO - J Am Soc Mass Spectrom VL - 16 UR - https://doi.org/10.1016/j.jasms.2005.05.009 DO - 10.1016/j.jasms.2005.05.009 ID - Norbeck2005 ER - TY - JOUR AU - Deutsch, M. AU - Long, M. PY - 1999 DA - 1999// TI - Intron-exon structures of eukaryotic model organisms JO - Nucleic Acids Res VL - 27 UR - https://doi.org/10.1093/nar/27.15.3219 DO - 10.1093/nar/27.15.3219 ID - Deutsch1999 ER - TY - JOUR AU - Kriventseva, E. V. AU - Gelfand, M. S. PY - 1999 DA - 1999// TI - Statistical analysis of the exon-intron structure of higher and lower eukaryote genes JO - J Biomol Struct Dyn VL - 17 UR - https://doi.org/10.1080/07391102.1999.10508361 DO - 10.1080/07391102.1999.10508361 ID - Kriventseva1999 ER - TY - JOUR AU - Johnson, J. M. AU - Castle, J. AU - Garrett-Engele, P. AU - Kan, Z. AU - Loerch, P. M. AU - Armour, C. D. AU - Santos, R. AU - Schadt, E. E. AU - Stoughton, R. AU - Shoemaker, D. D. PY - 2003 DA - 2003// TI - Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays JO - Science VL - 302 UR - https://doi.org/10.1126/science.1090100 DO - 10.1126/science.1090100 ID - Johnson2003 ER - TY - JOUR AU - Okazaki, Y. AU - Furuno, M. AU - Kasukawa, T. AU - Adachi, J. AU - Bono, H. AU - Kondo, S. AU - Nikaido, I. AU - Osato, N. AU - Saito, R. AU - Suzuki, H. PY - 2002 DA - 2002// TI - Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JO - Nature VL - 420 UR - https://doi.org/10.1038/nature01266 DO - 10.1038/nature01266 ID - Okazaki2002 ER - TY - JOUR AU - Petritis, K. AU - Kangas, L. J. AU - Ferguson, P. L. AU - Anderson, G. A. AU - Pasa-Tolic, L. AU - Lipton, M. S. AU - Aubery, K. J. AU - Strittmatter, E. F. AU - Shen, Y. AU - Zhao, R. PY - 2003 DA - 2003// TI - Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses JO - Anal Chem VL - 75 UR - https://doi.org/10.1021/ac0205154 DO - 10.1021/ac0205154 ID - Petritis2003 ER - TY - JOUR AU - Kitagawa, M. AU - Ara, T. AU - Arifuzzaman, M. AU - Ioka-Nakamichi, T. AU - Inamoto, E. AU - Toyonaga, H. AU - Mori, H. PY - 2005 DA - 2005// TI - Complete set of ORF clones of Escherichia coli ASKA library (A Complete Set of E. coli K-12 ORF Archive): Unique Resources for Biological Research JO - DNA Res VL - 12 UR - https://doi.org/10.1093/dnares/dsi012 DO - 10.1093/dnares/dsi012 ID - Kitagawa2005 ER -