Table 1 Gene overlap between HM200 and published cancer marker gene lists.
From: Mining expressed sequence tags identifies cancer markers of clinical interest
List 1 | List 2 | Overlap | Size of list 1 | Size of list 2 | pseudo-p-value |
|---|---|---|---|---|---|
HM200 | Pomeroy-400 | 27 | 200 | 305 | 1.04E-15 |
HM200 | Pomeroy-1 | 9 | 200 | 103 | 5.41E-06 |
HM200 | GDS1070 | 5 | 200 | 82 | 3.55E-03 |
HM200 | NC01-2000 | 0 | 200 | 420 | 1.13E-02 |
HM200 | GDS232 | 4 | 200 | 82 | 1.91E-02 |
HM200 | NuttGBM | 3 | 200 | 50 | 2.42E-02 |
HM200 | vantVeer2002 | 4 | 200 | 93 | 2.87E-02 |
HM200 | Pomeroy-3 | 4 | 200 | 95 | 3.07E-02 |
HM200 | Perou-Brown-Botstein1999 | 2 | 200 | 31 | 5.65E-02 |
HM200 | Pomeroy-2 | 4 | 200 | 132 | 8.25E-02 |
HM200 | Rhodes2004 | 2 | 200 | 57 | 1.58E-01 |
HM200 | GDS183 | 1 | 200 | 28 | 2.96E-01 |
HM200 | Pomeroy-0 | 3 | 200 | 166 | 4.65E-01 |
HM200 | NuttAO | 1 | 200 | 76 | 6.14E-01 |
HM200 | Pomeroy-4 | 0 | 200 | 92 | 6.33E-01 |