From: Accurate and unambiguous tag-to-gene mapping in serial analysis of gene expression
All TAGs | Unique TAGs | |||
---|---|---|---|---|
Frequency | Percentage | Frequency | Percentage | |
Classes | ||||
Platinum (Pt) | 28,948 | 37.68 | 28,948 | 43.40 |
Gold (Au) | 2,075 | 2.70 | 815 | 1.22 |
Silver (Ag) | 363 | 0.47 | 143 | 0.21 |
Aluminum (Al) | 4,139 | 5.39 | 1,580 | 2.37 |
Copper (Cu) | 31,844 | 41.45 | 31,844 | 47.74 |
Iron (Fe) | 6,417 | 8.35 | 2,037 | 3.05 |
Silicon (Si) | 3,040 | 3.96 | 1,336 | 2.00 |
Confidences | ||||
High | 62,780 | 81.72 | 62,780 | 94.12 |
Undefined | 11,082 | 14.42 | 3,923 | 5.88 |
Low | 2,964 | 3.86 | 0 | 0.00 |
Transcript context | ||||
UTR-5' | 1,669 | 4.70 | 1,481 | 4.70 |
ORF (CDS) | 28,645 | 80.63 | 25,049 | 79.56 |
UTR-3' | 5,211 | 14.67 | 4,956 | 15.74 |
Intergenic and transcripts | ||||
Intergenic | 41,301 | 53.76 | 35,217 | 52.80 |
Transcript opposite | 30,208 | 39.32 | 27,407 | 41.09 |
Transcript full | 35,172 | 45.78 | 31,143 | 46.69 |
Partial transcript | 353 | 0.46 | 343 | 0.51 |
Total transcripts | 35,525 | 46.24 | 31,486 | 47.20 |
Introns | ||||
Intron | 380 | 1.07 | 212 | 0.67 |
Non-intron | 35,145 | 98.93 | 31,274 | 99.33 |
Poly(A) next | ||||
Poly(A) next | 1,606 | 4.52 | 1,541 | 4.89 |
Non-poly(A) next | 33,919 | 95.48 | 29,945 | 95.11 |
Non coding RNAs | ||||
Non-mRNAs | 367 | 1.03 | 203 | 0.64 |
Splicing | ||||
Spliced | 13 | 0.02 | 12 | 0.02 |
Position within the transcript | ||||
Position 1 | 6,415 | 18.06 | 6,156 | 17.48 |
Position 2 | 5,733 | 16.14 | 5,423 | 15.40 |
Position 3 | 4,943 | 13.91 | 4,306 | 12.23 |
Position 4 | 4,054 | 11.41 | 3,542 | 10.06 |
Position 5 | 3,217 | 9.06 | 2,787 | 7.91 |
Position 6 | 2,537 | 7.14 | 2,186 | 6.21 |
Position 7 | 1,965 | 5.53 | 1,672 | 4.75 |
Position 8 | 1,516 | 4.27 | 1,267 | 3.60 |
Position 9 | 1,163 | 3.27 | 972 | 2.76 |
Position 10 | 894 | 2.52 | 754 | 2.14 |
Total | ||||
Total | 76,826 | 100.00 | 66,703 | 100.00 |