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Table 3 Optimal parameters

From: Evaluation of clustering algorithms for protein-protein interaction networks

Algorithm Parameter Optimized for accuracy Optimized for separation
MCL Inflation 1.8 1.8
MCODE Depth 100 5
  Node score percentage 0 0
  Haircut TRUE TRUE
  Fluff FALSE FALSE
  Percentage for complex fluffing 0.2 0.9
RNSC Diversification frequency 50 50
  Shuffling diversification length 9 3
  Tabu length 50 50
  Tabu list tolerance 1 1
  Number of experiments 3 3
  Naive stopping tolerance 1 15
  Scaled stopping tolerance 15 15
SPC Number of nearest neighbours 15 10
  Temperature 0.132 0.116