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Table 2 SDRF representation of the investigation design graph in Figure 3.

From: A simple spreadsheet-based, MIAME-supportive format for microarray data: MAGE-TAB

Sample ID Characteristics [Organism] Characteristics [OrganismPart] Protocol REF Extract ID Protocol REF Label Hybridization ID ArrayDesign REF ArrayData URI DerivedArrayData Matrix URI
liver 1 Homo sapiens liver P-XMPL-1 Extract 1 P-XMPL-3 Cy3 Hyb 1 SMD-10K 1.txt FGDM.txt
liver 2 Homo sapiens liver P-XMPL-1 Extract 2 P-XMPL-3 Cy3 Hyb 1 SMD-10K 1.txt FGDM.txt
kidney 1 Homo sapiens kidney P-XMPL-1 Extract 3 P-XMPL-3 Cy3 Hyb 2 SMD-10K 2.txt FGDM.txt
kidney 2 Homo sapiens kidney P-XMPL-1 Extract 4 P-XMPL-3 Cy3 Hyb 2 SMD-10K 2.txt FGDM.txt
brain 1 Homo sapiens brain P-XMPL-1 Extract 5 P-XMPL-3 Cy3 Hyb 3 SMD-10K 3.txt FGDM.txt
brain 2 Homo sapiens brain P-XMPL-1 Extract 6 P-XMPL-3 Cy3 Hyb 3 SMD-10K 3.txt FGDM.txt
     Extract reference P-XMPL-3 Cy5 Hyb 1 SMD-10K 1.txt FGDM.txt
     Extract reference P-XMPL-3 Cy5 Hyb 2 SMD-10K 2.txt FGDM.txt
     Extract reference P-XMPL-3 Cy5 Hyb 3 SMD-10K 3.txt FGDM.txt
  1. Each 'layer' in the graph is represented by an ID column in the spreadsheet, followed by columns for each of the labels. Each path in the graph is represented by one row in the spreadsheet.