From: Effects of filtering by Present call on analysis of microarray experiments
Unfiltered (total) | FP>0 sig254 RMA4.25 | FP25 sig375 RMA4.75 | FP50 sig475 RMA5.03 | FP75 sig593 RMA5.30 | FP100 sig795 RMA5.65 | |
---|---|---|---|---|---|---|
IFN Data | ||||||
Fraction Present | 22,283 | 14,035 | 11,906 | 10,678 | 9,545 | 8,050 |
Average Signal | 22,283 | 14,030 | 11,888 | 10,657 | 9,546 | 8,057 |
Overlap (MAS5)b | 89% | 89% | 88% | 87% | 85% | |
Average RMA value | 22,283 | 14,118 | 11,909 | 10,687 | 9,526 | 8,076 |
Overlap (RMA)c | 77% | 77% | 77% | 77% | 77% | |
Unfiltered (total) | FP>0 sig200 RMA5.05 | FP25 sig265 RMA5.47 | FP50 sig323 RMA5.70 | FP75 sig400 RMA5.95 | FP100 sig475 RMA6.17 | |
Vitamin A Data | ||||||
Fraction Present | 8799 | 4611 | 3981 | 3627 | 3237 | 2896 |
Average Signal | 8799 | 4536 | 3988 | 3625 | 3231 | 2904 |
Overlap (MAS5)b | 84% | 84% | 84% | 83% | 93% | |
Average RMA value | 8799 | 4639 | 3984 | 3635 | 3229 | 2890 |
Overlap (RMA)c | 73% | 72% | 72% | 72% | 71% |