Table 3 Predictive results obtained by using various similarity definitions for proteins
From: Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
Similarity Definition | MAX | AVG | SUM | AVG_BestPairs |
|---|---|---|---|---|
Compartment | MCC (Accuracy %) | |||
PML BODY | 0.189 (28.9) | 0.153 (34.2) | 0.129 (76.3) | -0.031 (0.0) |
Nuclear Lamina | 0.344 (45.5) | 0.535 (63.6) | 0.455 (45.5) | 0.315 (61.8) |
Nuclear Splicing Speckles | 0.377 (35.7) | 0.251 (71.4) | 0.289 (33.9) | 0.013 (12.5) |
Chromatin | 0.236 (19.7) | 0.218 (16.4) | 0.112 (4.9) | 0.142 (8.2) |
Nucleoplasm | 0.272 (29.3) | 0.039 (9.3) | -0.079 (4.0) | 0.118 (6.7) |
Nucleolus | 0.367 (75.8) | 0.431 (44.7) | 0.214 (26.0) | 0.289 (75.3) |
Overall for Single-localization | 0.298 (50.8) | 0.271 (40.3) | 0.187 (27.0) | 0.141 (42.9) |
Similarity Definition | SUM_BestPairs | AVG_Match | SUM_Match | MAX_Match |
Compartment | MCC (Accuracy %) | |||
PML BODY | 0.242 (44.7) | 0.187 (34.2) | 0.253 (34.2) | 0.211 (31.6) |
Nuclear Lamina | 0.53 (67.3) | 0.586 (60.0) | 0.578 (63.6) | 0.344 (45.5) |
Nuclear Splicing Speckles | 0.438 (46.4) | 0.397 (66.1) | 0.607 (62.5) | 0.487 (46.4) |
Chromatin | 0.325 (36.1) | 0.467 (45.9) | 0.518 (60.7) | 0.263 (21.3) |
Nucleoplasm | 0.284 (36.0) | 0.332 (32.0) | 0.504 (56.0) | 0.298 (32.0) |
Nucleolus | 0.512 (66.7) | 0.615 (72.6) | 0.656 (79.0) | 0.407 (76.7) |
Overall for Single-localization | 0.388 (54.6) | 0.431 (58.3) | 0.519 (66.5) | 0.335 (53.2) |