Table 6 Results obtained with and without the use of the six GO terms related to subnuclear compartments.
From: Assessing protein similarity with Gene Ontology and its use in subnuclear localization prediction
GO Module with BLAST homologs | With the subnuclear compartment GO terms | without the subnuclear compartment GO terms |
|---|---|---|
Compartment | MCC (Accuracy %) | |
PML BODY | 0.291 (40.0) | 0.290 (40.0) |
Nuclear Lamina | 0.626 (67.4) | 0.609 (65.1) |
Nuclear Splicing Speckles | 0.657 (70.0) | 0.640 (73.7) |
Chromatin | 0.544 (63.5) | 0.543 (61.5) |
Nucleoplasm | 0.543 (58.5) | 0.548 (60.0) |
Nucleolus | 0.744 (82.5) | 0.723 (80.1) |
Overall for Single-localization | 0.568 (70.1) | 0.559 (69.2) |
Number of proteins predicted by the GO module | 401 out of 504 | 399 out of 504 |