Table 3 Simulating the basic characteristics of gene selection procedures, 125 differentially expressed genes, 200 simulation runs, n = 43. The table presents mean values over simulation runs. Standard deviations are given in parentheses.
From: Assessing stability of gene selection in microarray data analysis
Method | Number of Selected Genes | FDR | Power | |||
|---|---|---|---|---|---|---|
| Â | SIM43 | SIM43CORR | SIM43 | SIM43CORR | SIM43 | SIM43CORR |
B/KS | 125(0.3) | 125(0.5) | <0.0003 | <0.0001 | 1 | 1 |
B/CVM | 125(0.3) | 125(0.3) | <0.0005 | <0.0005 | 1 | 1 |
B/t | 125(0.2) | 125(0.4) | <0.0003 | <0.0006 | 1 | 1 |
WY/KS | 125(0.4) | 125(0.4) | <0.0002 | <0.0003 | 1 | 1 |
WY/CVM | 125(0.3) | 125(0.4) | <0.0006 | <0.0010 | 1 | 1 |
WY/t | 125(0.2) | 125(0.3) | <0.0003 | <0.0008 | 1 | 1 |
BH/t | 131(2.7) | 140(90.0) | 0.0427(0.0192) | 0.0356(0.1219) | 1 | 1 |
EB/t | 125(0.2) | 133(60.0) | 0.0082(0.0012) | 0.0246(0.1024) | 1 | 1 |