Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

BMC Bioinformatics

Table 1 Overview of data sets

Name	Data set	Samples	Binders	Non-binders
MHCBN	HLA-DRB1*0101	580	475	105
	HLA-DRB1*0301	369	219	150
MHCBench	Set 1	1017	694	323
	Set 2	673	381	292
	Set 3a	590	373	217
	Set 3b	495	279	216
	Set 4a	646	323	323
	Set 4b	584	292	292
	Set 5a	117	70	47
	Set 5b	85	48	37
MHCPEP	20 sets from MHC alleles	3578	3578	0

Overview of the benchmark data sets. MHCBench Sets 1–5 contain data from the HLA-DRB1*0401 allele. MHCPEP consists of data from numerous alleles, with 18 MHC Class II and a single MHC Class I allele selected.

ISSN: 1471-2105