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Table 1 Overview of data sets

From: Predicting Class II MHC-Peptide binding: a kernel based approach using similarity scores

Name Data set Samples Binders Non-binders
MHCBN HLA-DRB1*0101 580 475 105
  HLA-DRB1*0301 369 219 150
MHCBench Set 1 1017 694 323
  Set 2 673 381 292
  Set 3a 590 373 217
  Set 3b 495 279 216
  Set 4a 646 323 323
  Set 4b 584 292 292
  Set 5a 117 70 47
  Set 5b 85 48 37
MHCPEP 20 sets from MHC alleles 3578 3578 0
  1. Overview of the benchmark data sets. MHCBench Sets 1–5 contain data from the HLA-DRB1*0401 allele. MHCPEP consists of data from numerous alleles, with 18 MHC Class II and a single MHC Class I allele selected.