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Table 2 The over-represented phosphorylation sites motifs found by D-STAR

From: A correlated motif approach for finding short linear motifs from protein interaction networks

Motif

Expected

Observed

Odd-Ratio

[R/K]x[S/T]

3.15

17

5.40

Kxx[S/T]

1.22

6

4.92

  1. The motifs of the phosphorylation sites that are over-represented in the segment set with the general pattern "GKT[CIS][ILT][IL]". As the motifs are degenerate, we compared their actual number of occurrence with their expected random occurrence within any random segment set of the same size preserving the same amino acid distribution as the whole dataset's.
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BMC Bioinformatics

ISSN: 1471-2105

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