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Table 1 Export to CellNetAnalyzer

From: Visual setup of logical models of signaling and regulatory networks with ProMoT

Name

Description

 

Def

Sh

t

-

x y

- - -

r1

1 a1 + 1 !ph1 = 1 k1

|

#

1

1

0

310 346

1 1 0

r2

1 a1 = 1 ph2

|

#

0

2

0

689 285

1 1 0

r3

= 1 r1

|

0

0

1

0

373 134

1 1 0

r4

= 1 r2

|

0

0

1

0

621 77

1 1 0

r5

1 inputk3r = 1 k3r

|

1

0

1

0

485 493

1 1 0

r6

1 k1 + 1 k3r = 1 k3p1

|

#

0

1

0

317 434

1 1 0

r7

1 k2 + 1 k3r = 1 k3p2

|

#

0

1

0

624 474

1 1 0

r8

1 k3p1 = 1 ph1

|

#

0

2

0

259 493

1 1 0

r9

1 !r1 + 1 r2 = 1 a2

|

#

0

1

0

633 269

1 1 0

r10

1 r1 = 1 a1

|

#

0

1

0

322 188

1 1 0

r11

1 a2 + 1 k1 = 1 k2

|

#

0

1

0

596 410

1 1 0

r12

1 a2 + 1 ph2 = 1 k2

|

#

0

1

0

629 411

1 1 0

r13

1 tf1 =

|

#

0

1

0

472 718

1 1 0

r14

1 k3p1 = 1 tf1

|

#

0

1

0

429 626

1 1 0

r15

1 k3p2 = 1 tf1

|

#

0

1

0

496 625

1 1 0

r16

1 k3p1 + 1 k3p2 = 2 tf1

|

#

0

1

0

471 653

1 1 0

  1. The table shows the file exported to CNA [6], where Def means default value, # codes an non-determined value, Sh whether an element posses an incomplete truth table (1) (i.e., is a somehow, see main text) or not (0), t the time scale, and x and y the positions in the map. In CNA an AND connection is coded via '+' instead of '·' and the exclamation mark '!' indicates a NOT.