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Table 5 Differentially co-expressed groups from the ALL subtype dataset

From: CoXpress: differential co-expression in gene expression data

group N t1 t2 pr.g1 pr.g2 mean.corr1 mean.corr2 robustness
47 16 59.8611 2.453073 0 0.0684 0.66915 0.05863 805
31 10 29.20261 2.194293 0 0.0677 0.64726 0.07787 861
89 13 42.1617 1.934779 0 0.0904 0.63834 0.04420 885
41 11 30.19613 1.122452 0 0.2115 0.63042 0.05146 986
25 12 34.18317 2.531833 0 0.0503 0.62832 0.10027 686
9 14 30.35473 2.324388 0 0.0655 0.59705 0.06109 829
71 13 33.96871 2.236447 0 0.0658 0.58783 0.05880 855
15 19 45.6475 1.865767 0 0.1373 0.58500 0.03853 1000
103 10 29.54434 -1.24949 0 0.9613 0.58393 -0.03758 1000
19 20 45.45846 1.509674 0 0.2093 0.5810 0.02446 1000
11 16 43.62891 1.402566 0 0.1964 0.57995 0.02908 1000
114 12 32.84917 1.192507 0 0.205 0.57624 0.03668 995
32 13 34.2227 1.097651 0 0.2275 0.57004 0.03208 982
  1. Differentially co-expressed groups from the ALL subtype dataset of Yeoh et al [23]. Group is the group number, N is the group size, t1 and t2 are the observed t-statistics in the BCR-ABL and T-ALL1 subsets, pr.g1 and pr.g2 are the probability of randomness statistics for the BCR-ABL and T-ALL1 subsets, mean.corr1 and mean.corr2 are the mean pairwise correlation coefficients for the genes in the BCR-ABL and T-ALL1 subsets and robustness is the number of times that the group was differentially co-expressed in 1000 randomly resampled data sets using only 75% of the observations in each leukaemia subtype. Groups are ordered by mean.corr1. The table has been filtered such that pr.g1 ≤ 0.05, pr.g2 ≥ 0.05 and N ≥ 10.