Connectivity independent protein-structure alignment: a hierarchical approach

BMC Bioinformatics

Table 2 Structure alignments versus 2uagA1

structure	$q_{res}^{st}$ , eq. (9)	RMSD	G-score, eq. (10)	P-value^a	# residues^b
1dhs	0.603	3.11 Å	0.0505	0.0036	42
1cjcA2	0.671	3.94 Å	0.0715	0.0106	37
average^c	0.652	3.83 Å	0.0661	0.0082	n/a

Results from the database scan with reference structure 2uagA1. Structure alignment results for 1dhs and 1cjcA2, and results averaged over all 135 alignments without gaps.
^a Upper bound for P-value.
^b Number of aligned residues.
^c Average statistics over all 135 structure alignments against the complete 2uagA1 structure.

ISSN: 1471-2105