BMC Bioinformatics

Table 4 Results for the Fischer dataset.

From: Connectivity independent protein-structure alignment: a hierarchical approach

protein pair		successful matches
reference structure	result structure	rank	PDB code	CATH level^a
1bgeB	2gmfA	1	1bgc	H
		2	1alu	H
		6	1lki	H
1cewI	1molA	49	1eqkA	H
		66	1stfI	H
1cid01	2rhe	25	1eajA	H
		35	1ojaE1	H
1crl	1ede	1	1llfA	S
1fxiA	1ubq	14	1m94A	H
		23	1c1yB	H
		26	1lm8B	H
		40	1lfdA	H
1ten	3hhrB	2	1fnf02	H
		4	1f6fB2	H
		5	1fhyB2	H
		8	1cd9B2	H
1tie	4fgf	1	1avwB	H
		2	1wba	H
		6	1jlxA1	H
		8	1md6A	H
		12	1q1uA	H
2azaA	1paz	1	1qhqA	H
		2	1jzgA	H
		3	1sdfA	H
		4	1plc	H
		8	1jw0A3	H
2sim	1nsbA	1	3sil	H
		14	1usrA	H
3hlaB	2rhe	1	1k5nB	H
		4	1fp5A2	H
		13	1mjaH	H
		15	1ojae2	H
1g61	1jdw	1	1jdw	result
		2	1g62A	H
		54	1bwdA	S

For all 11 Fischer pairs the structures from the database are given, which are most similar to the specified target structure together with their rank and CATH classification.
^a CATH hierarchy levels [46]: H: same homologous superfamily, S: same sequence family.

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ISSN: 1471-2105

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