Table 2 Analysis of all possible permutations of the TATA-box elements TATAAA and TATATA in the promoter sequences of the four model organisms.
Element | At1500tss | At1500patg | Sc1500atg | Dm1500tss | Dm1500atg | Ce1500tss | Ce1500atg |
|---|---|---|---|---|---|---|---|
TATAAA | 95.9 | 11.2 | 15.0 | 49.6 | 10.1 | 5.0 | 30.1 |
TATATA | 81.6 | 11.1 | 16.3 | 10.9 | 4.8 | 6.7 | 10.9 |
ATATAA | 67.7 | 6.8 | 15.1 | 18.0 | 5.2 | 6.7 | 15.5 |
ATAAAT | 52.0 | 4.9 | 8.3 | 12.2 | 6.0 | 4.7 | 5.9 |
ATATAT | 43.7 | 4.2 | 10.1 | 10.1 | 6.4 | - | 4.7 |
TAAATA | 41.4 | 4.0 | 8.1 | 10.8 | 7.6 | 6.1 | 5.1 |
TTATAT | 27.0 | - | 7.2 | 9.7 | 4.7 | 5.7 | 8.1 |
TTTATA | 22.9 | - | 6.8 | 8.6 | 5.4 | 5.2 | 5.3 |
TTATAA | 22.5 | - | 6.2 | 8.7 | 6.3 | 4.8 | 4.2 |
TATTTA | 19.5 | 4.1 | 7.6 | 9.6 | 6.8 | 4.3 | 6.4 |
AATATA | 14.1 | - | 13.5 | 11.4 | 6.3 | - | 4.5 |
TATATT | 13.1 | - | 8.5 | 10.2 | 6.9 | 5.5 | 8.5 |
TTTAAA | 12.8 | - | 5.1 | 15.1 | 6.3 | 5.1 | 4.5 |
TATAAT | 12.3 | - | 5.4 | 7.9 | 5.3 | 4.8 | 5.9 |
TTAAAA | 12.1 | - | 7.9 | 12.7 | 7.5 | - | 4.2 |
ATTATA | 11.4 | - | 9.0 | 8.1 | 5.6 | - | - |
ATTTAA | 9.8 | 4.6 | 4.5 | 11.6 | 6.6 | 8.0 | 6.1 |
ATTTAT | 9.7 | - | 6.0 | 8.0 | 5.2 | 4.4 | 7.6 |
TTAAAT | 9.1 | - | 5.1 | 12.4 | 6.8 | 5.3 | 4.7 |
TAATAA | 9.0 | - | 7.3 | 10.9 | 7.1 | 6.7 | 4.5 |
TAAAAT | 8.8 | - | 4.5 | 13.0 | 6.6 | 6.5 | 4.6 |
ATTAAA | 8.5 | - | 6.7 | 9.6 | 6.5 | 4.4 | - |
TAAATT | 8.4 | - | - | 11.7 | 5.5 | 6.0 | 8.1 |
AAATAT | 8.2 | - | 8.6 | 10.5 | 5.5 | 6.5 | - |
TATTAA | 8.1 | - | 6.8 | 9.6 | 6.3 | 4.2 | 4.5 |
AATTAA | 7.7 | 4.2 | 9.7 | 10.0 | 5.8 | 4.6 | 4.5 |
ATAATA | 7.5 | - | 8.9 | 9.3 | 6.6 | 4.9 | - |
AATTTT | 6.3 | - | 9.6 | 10.7 | 5.5 | 16.5 | 7.7 |
TTAATA | 6.3 | - | 6.5 | 10.3 | 7.0 | 6.8 | 4.6 |
TTTTAA | 6.2 | - | 6.0 | 11.8 | 6.6 | 5.9 | 4.9 |
ATTAAT | 6.1 | 4.3 | 5.7 | 7.6 | 5.8 | 6.2 | 6.6 |
ATATTA | 5.9 | - | 5.7 | 9.8 | 6.2 | 4.1 | 4.0 |
AATAAT | 5.9 | - | 5.9 | 8.8 | 5.8 | 7.2 | 6.3 |
TTATTA | 5.9 | - | 5.4 | 8.7 | 5.5 | - | 6.3 |
TTAATT | 5.7 | 4.3 | 4.8 | 8.8 | 5.5 | 11.6 | 11.2 |
TAATTA | 5.7 | 4.1 | 6.5 | 7.4 | 5.9 | 5.2 | 5.3 |
AAATTA | 5.6 | - | 6.2 | 10.0 | 5.9 | - | - |
ATAATT | 5.3 | 4.4 | 5.9 | 9.3 | 5.5 | 5.7 | 6.7 |
AAAATT | 5.3 | - | 10.6 | 10.0 | 6.8 | 4.5 | - |
TTTAAT | 5.1 | 4.0 | 4.7 | 9.8 | 7.3 | 6.7 | 8.4 |
ATTATT | 5.0 | - | 6.3 | 9.5 | 6.2 | 5.2 | 9.3 |
AAATTT | 4.9 | - | 8.9 | 9.5 | 6.8 | 9.3 | 6.0 |
TATTAT | 4.8 | - | 7.3 | 8.2 | 5.6 | 4.7 | 5.6 |
AATATT | 4.8 | - | 5.7 | 9.6 | 6.1 | 9.5 | 8.0 |
TAATAT | 4.8 | - | 7.7 | 8.5 | 7.6 | 5.9 | 5.7 |
ATTTTA | 4.7 | - | 5.3 | 9.8 | 7.3 | 4.7 | 7.3 |
AATTAT | 4.6 | - | 4.6 | 8.0 | 5.5 | 5.2 | 5.4 |
ATATTT | 4.3 | - | 7.8 | 9.9 | 6.3 | 8.0 | 8.5 |
TAATTT | 4.3 | - | 5.1 | 11.1 | 6.0 | 14.3 | 11.5 |
AATTTA | 4.3 | 4.1 | - | 9.7 | 7.4 | 5.7 | 7.2 |