Table 2 BAliBASE version 3.0 contents

Reference 1.1

phylogenetically equidistant (less than 20% identity)

Reference 1.2

phylogenetically equidistant (20 to 40% identity)

Reference 2

families including orphan sequences

Reference 3

equidistant families (less than 25% identity)

Reference 4

long N/C terminal extensions (excluded from homologous region set)

Reference 5

long internal insertions