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Table 5 Average sum-of-pairs scores of homologous region set

From: Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost

 

Ref. 1.1

Ref. 1.2

Ref. 2

Ref. 3

Ref. 5

Overall

Ranksum

PRIME piecewise

0.772

0.940

0.955

0.903

0.891

0.894

613

PRIME affine

0.781

0.938

0.954

0.907

0.896

0.897

634

Prrn

0.763

0.936

0.954

0.894

0.887

0.889

698

MAFFT

0.753

0.940

0.946

0.890

0.897

0.886

654

ProbCons

0.788

0.953

0.953

0.910

0.907

0.904

489

T-Coffee

0.704

0.939

0.940

0.878

0.888

0.870

821

MUSCLE

0.735

0.931

0.943

0.882

0.870

0.875

907

DIALIGN-T

0.573

0.901

0.897

0.793

0.821

0.798

1406

POA

0.634

0.877

0.923

0.822

0.800

0.816

1370

ClustalW

0.664

0.905

0.922

0.816

0.788

0.827

1263

  1. Each column shows average sum-of-pairs scores using all alignments of each reference of the homologous region set. Overall and Ranksum columns show the average sum-of-pairs scores and the rank sum of the Friedman test using all alignment of the whole homologous region set, respectively. A smaller rank sum means better accuracy.