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Figure 3 | BMC Bioinformatics

Figure 3

From: Logarithmic gap costs decrease alignment accuracy

Figure 3

The curves of the best gap costs. A) The entire range of the curves and B) a magnification of the beginning of the curves. The best gap costs were decided for each scheme based on highest average alignment identity. Log-Affine: G (k) = 2 + k/4 + (ln k)/2 (solid) , affine G A (x) = 4 + k/4 (dashed), and logarithmic G L (k) = 1/8 + 8 ln k (dotted).

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BMC Bioinformatics

ISSN: 1471-2105

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