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Table 2 Comparison of methods on simulated data sets with 33 kb marker spacing.

From: HaploRec: efficient and accurate large-scale reconstruction of haplotypes

Method Switch accuracy No. of markers Time per marker (sec.)
HaploRec-S 0.990 100 19.2
HaploRec-VMM 0.980 100 5.2
(HaploRec-S) (0.969) (30) (6.6)
(HaploRec-VMM) (0.970) (30) (2.5)
Phase 0.981 30 1585
fastPhase 0.858 20 61.3
PL-EM 0.938 30 0.9
Snphap 0.921 30 0.4
Gerbil 0.745 5 2.6
  1. For each method, the table gives the accuracy, the number of markers to be haplotyped at a time to achieve that accuracy, and the running time per marker. As 30 marker windows are optimal for many methods, results for them are given in parenthesis also for the HaploRec variants.