Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE

BMC Bioinformatics

Table 6 Comparison of selected genes for Prostate cancer.

Rank	GAN	[14]	Rank		Gene description
			S2N	SVM-RFE
1	X07732	•	1	1	hepsin (transmembrane protease, serine 1) (HPN)
2	M30894	•	2	2	TCR gamma alternate reading frame protein (TARP)
3	M84526	•	3	89	complement factor D (adipsin) (CFD)
4	AL049969	•	4	65	PDZ and LIM domain 5 (PDLIM5)
5	X51345		38	5	jun B proto-oncogene (JUNB)
6	U21689		68	6	glutathione S-transferase pi (GSTP1)
7	M98539	•	297	15	prostaglandin D2 synthase 21kDa (brain) (PTGDS)
8	X17206		95	12	ribosomal protein S2 (RPS2)
9	D83018	•	6	41	NEL-like 2 (chicken) (NELL2)
10	AF065388	•	18	13	tetraspanin 1 (TSPAN1)

The 10 top-ranked genes of orthogonal MMC-RFE are listed in order of the rank; GAN: Gene Accession Number. Genes selected by Singh et al. [14] are denoted by •. C = 0.01 was used for SVM-RFE.

ISSN: 1471-2105