Recursive gene selection based on maximum margin criterion: a comparison with SVM-RFE

BMC Bioinformatics

Table 8 Comparison of selected genes for Breast cancer.

Rank	GAN	[16]	Rank		Gene description
			S2N	SVM-RFE
1	Contig63649_RC	•	3	40	ESTs
2	AL080059	•	1	2	TSPY-like5 (TSPYL5)
3	Contig27312_RC		133	48	collagen, type XXIII, alpha 1 (COL23A1)
4	NM_001756		412	35	serpin peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 6 (SERPINA6)
5	Contig48328_RC	•	2	4	zinc finger protein 533 (ZNF533)
6	NM_001635		69	24	amphiphysin (AMPH)
7	NM_006681	•	17	13	neuromedin U (NMU)
8	NC_001807		1174	39	Human mitochondrion (ND1)
9	NM_000599	•	53	38	insulin-like growth factor binding protein 5 (IGFBP5)
10	NM_000518		1387	45	hemoglobin, beta (HBB)

The 10 top-ranked genes of orthogonal MMC-RFE are listed in order of the rank; GAN: Gene Accession Number. Genes selected by van't Veer et al. [16] are denoted by •. C = 0.001 was used for SVM-RFE.

ISSN: 1471-2105