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Table 1 Correlations in HCC. In this table are listed some terms for which there is a significant number of relations in cancer but not in normal tissues. The table presents: in the first column, the name of the GO term; in the second (Pairs HCC) the number of correlations present in the cancer samples; in the third (Pairs LIV), the number of correlations found in the normal tissues. For each GO term, we report the mean and the standard deviation as computed by bootstrap analysis, as described in "Methods" Section.

From: Finding biological process modifications in cancer tissues by mining gene expression correlations

Gene Ontology term

Pairs HCCmean(stdev)

Pairs LIVmean(stdev)

antigen presentation, endogenous antigen

2 0(0)

0 0(0)

blood coagulation

12 1.05(1.05)

2 1.3(1.3)

DNA replication

18 1.45(1.8)

2 1.45(1.4)

regulation of translational initiation

2 0.05(0.22)

1 0.25 (0.44)

DNA replication initiation

2 0.05(0.22)

0 0(0)

antigen processing, endogenous antigen via MHC class I

2 0.05(0.22)

0 0(0)

metabolism

33 9.45(3.4)

10 8.95(4.0)

cell cycle arrest

4 0.45(0.51)

0 1.15(2.0)

negative regulation of cell proliferation

10 1.95(1.3)

2 2.25(2.3)

chromatin remodeling

2 0.1(0.31)

0 0.15(0.37)

mitosis

6 0.7(0.86)

0 1(0.79)

heterophilic cell adhesion

3 0.15(0.49)

0 0.35(0.67)

cytokinesis

7 1.15(1.1)

0 1(1.1)

positive regulation of cell proliferation

4 0.7(0.66)

1 0.95(1.1)

cell adhesion

17 7.8(1.9)

3 11.4(5.6)

cholesterol metabolism

2 0.2(0.41)

0 0.25(0.72)

lipid transport

3 0.35(0.67)

0 0.45(0.69)

cell cycle

10 2.2(2.2)

5 2.3(2.2)

proteolysis and peptidolysis

14 4.15(2.9)

4 4.45(3.3)

protein complex assembly

5 0.95(1.3)

2 1.3(2.1)

antimicrobial humoral response (sensu Vertebrata)

3 0.3(0.92)

1 0.55(0.83)

cell motility

8 1.8(2.3)

4 1.65(1.6)

fatty acid metabolism

3 0.65(0.99)

1 0.55(0.94)