Table 2 Correlations in LIV. In this table are listed some terms for which there is a significant number of relations in normal tissues but not in cancer. The table presents: in the first column, the name of the GO term; in the second (Pairs HCC) the number of correlations present in the cancer samples; in the third (Pairs LIV), the number of correlations found in the normal tissues. For each GO term, we report the mean and the standard deviation as computed by bootstrap analysis, as described in "Methods" Section.
From: Finding biological process modifications in cancer tissues by mining gene expression correlations
Gene Ontology term | Pairs HCCmean(stdev) | Pairs LIVmean(stdev) |
|---|---|---|
intra-Golgi transport | 0 0.1(0.31) | 2 0.05(0.22) |
ubiquitin-dependent protein catabolism | 1 0.8(1.0) | 4 0.35(0.49) |
regulation of translation | 0 0.2(0.70) | 3 0.2(0.41) |
glycolysis | 1 0.15(0.49) | 2 0.1(0.31) |
electron transport | 15 7.4(4.3) | 35 9(4.6) |
ER to Golgi transport | 0 0.3(0.57) | 4 0.35(0.67) |
inactivation of MAPK | 0 0(0) | 2 0.15(0.37) |
intracellular protein transport | 23 18.1(7.8) | 57 20.3(8.3) |
small GTPase mediated signal transduction | 4 1.35(1.5) | 5 1.15(1.3) |
mRNA processing | 2 0.75(1.1) | 4 0.8(1.1) |
ubiquitin cycle | 1 2.05(1.5) | 10 2.3(2.7) |
cell growth | 1 0.3(0.57) | 2 0.35(0.59) |
N-linked glycosylation | 0 0.45(0.94) | 2 0.45(0.60) |
regulation of cell cycle | 3 2.35(1.5) | 8 2.65(2.3) |
DNA repair | 1 0.85(0.88) | 3 0.75(1.0) |