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Table 1 Loci exceeding gFWER thresholds for inferred haplotype bootstrap (IH-B) for HDLC phenotype. gFWER thresholds for association scores for k = 1,3,5,10,20 and 30 and the number of loci exceeding these thresholds for the HDLC phenotype using IH-B.

From: Comparative analysis of haplotype association mapping algorithms

k-gFWER

Threshold (alpha = .05)

Loci Above Threshold

FDR

1

4.92

0

>100%

3

4.19

2

>100%

5

3.91

4

>100%

10

3.53

17

52.9%

20

3.19

34

55.9%

30

3.00

46

63.0%