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Table 1 Metabolic networks used in this study.

From: Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation

Domain    Species KEGG Id Genomic Sequence
Bacteria Proteobacteria Gamma Escherichia coli K-12 MG1655 eco U00096
    Buchnera aphidicola buc BA_000003
    Salmonella typhi CT18 sty NC_003198
    Yersinia pestis CO92 ype NC_003143
    Vibrio cholorae vch NC_002505
    Pseudomonas aeruginosa pae NC_002516
   Rickettsiales Rickettsia prowazekii rpr NC_000963
    Wolbachia endosymbiont wol NC_002978
  Firmicutes Mollicutes Mycoplasmae genitalium mge L43967
    Mycoplasmae pneumoniae mpn NC_000912
    Ureaplasmae urealyticum uur NC_002162
  Spirochaetes   Borrelia burgdorferi bbu AE000783
    Treponema pallidum tpa NC_000919
    Treponema denticola tde NC_002967
  Actinobacteria   Mycobacterium leprae mle NC_002677
    Bifidobacterium longum blo NC_004307
    Corynebacterium diphtheriae cdi NC_002935
  Hyperthermophilic bacteria   Aquifex aeolicus aae AE000657
    Thermotoga maritima tma AE000512
Archaea Euryarchaeota   Methanocaldococcus jannaschii mja NC_000909
    Methanothermobacter thermoautotrophicus mth NC_000916
    Archaeoglobus fulgidus afu NC_000917
    Pyrococcus horikoshii pho BA000001
    Pyrococcus abyssi pab NC_000865
    Pyrococcus furiosus pfu NC_003413
  Crenarchaeota   Aeropyrum pernix ape BA000002
    Pyrobaculum aerophilum pai NC_003364