Table 1 Metabolic networks used in this study.
From: Algebraic comparison of metabolic networks, phylogenetic inference, and metabolic innovation
Domain | Â | Â | Species | KEGG Id | Genomic Sequence |
|---|---|---|---|---|---|
Bacteria | Proteobacteria | Gamma | Escherichia coli K-12 MG1655 | eco | U00096 |
| Â | Â | Â | Buchnera aphidicola | buc | BA_000003 |
| Â | Â | Â | Salmonella typhi CT18 | sty | NC_003198 |
| Â | Â | Â | Yersinia pestis CO92 | ype | NC_003143 |
| Â | Â | Â | Vibrio cholorae | vch | NC_002505 |
| Â | Â | Â | Pseudomonas aeruginosa | pae | NC_002516 |
| Â | Â | Rickettsiales | Rickettsia prowazekii | rpr | NC_000963 |
| Â | Â | Â | Wolbachia endosymbiont | wol | NC_002978 |
| Â | Firmicutes | Mollicutes | Mycoplasmae genitalium | mge | L43967 |
| Â | Â | Â | Mycoplasmae pneumoniae | mpn | NC_000912 |
| Â | Â | Â | Ureaplasmae urealyticum | uur | NC_002162 |
| Â | Spirochaetes | Â | Borrelia burgdorferi | bbu | AE000783 |
| Â | Â | Â | Treponema pallidum | tpa | NC_000919 |
| Â | Â | Â | Treponema denticola | tde | NC_002967 |
| Â | Actinobacteria | Â | Mycobacterium leprae | mle | NC_002677 |
| Â | Â | Â | Bifidobacterium longum | blo | NC_004307 |
| Â | Â | Â | Corynebacterium diphtheriae | cdi | NC_002935 |
| Â | Hyperthermophilic bacteria | Â | Aquifex aeolicus | aae | AE000657 |
| Â | Â | Â | Thermotoga maritima | tma | AE000512 |
Archaea | Euryarchaeota | Â | Methanocaldococcus jannaschii | mja | NC_000909 |
| Â | Â | Â | Methanothermobacter thermoautotrophicus | mth | NC_000916 |
| Â | Â | Â | Archaeoglobus fulgidus | afu | NC_000917 |
| Â | Â | Â | Pyrococcus horikoshii | pho | BA000001 |
| Â | Â | Â | Pyrococcus abyssi | pab | NC_000865 |
| Â | Â | Â | Pyrococcus furiosus | pfu | NC_003413 |
| Â | Crenarchaeota | Â | Aeropyrum pernix | ape | BA000002 |
| Â | Â | Â | Pyrobaculum aerophilum | pai | NC_003364 |