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Table 2 Cross-validated density prediction accuracy of NBDP models. Average KL divergence for the Naive Bayes' Density Predictor is shown for the 3- and 8-class prediction tasks with varying sequence window sizes. The residues in the window were described using the amino acid identity method. All predictions are for 10-fold cross-validation on the training set (set-174). Best results are shown in bold.

From: Prediction of protein continuum secondary structure with probabilistic models based on NMR solved structures

window size

3-class accuracy

8-class accuracy

5

0.77

1.20

7

0.75

1.19

9

0.75

1.19

11

0.74

1.20

13

0.75

1.22

15

0.76

1.25

17

0.78

1.28

19

0.79

1.31