Skip to main content

Table 1 Pathway allocation performance of using exactly matching phylogenetic profiles. AA (UU) denotes pairs in which both genes are annotated (unannotated), and AU denotes pairs with one annotated and one unannotated gene. N is the number of links. G is the number of genes that form those links (unannotated genes in AU). N* is the number of links between genes that share at least one path; G* is the number of such genes. PPV, A0, AC, sensitivity and specificity are defined as in Material and Methods.

From: Gene annotation and network inference by phylogenetic profiling

  N N* G G* P P V ¯ MathType@MTEF@5@5@+=feaafiart1ev1aaatCvAUfKttLearuWrP9MDH5MBPbIqV92AaeXatLxBI9gBaebbnrfifHhDYfgasaacH8akY=wiFfYdH8Gipec8Eeeu0xXdbba9frFj0=OqFfea0dXdd9vqai=hGuQ8kuc9pgc9s8qqaq=dirpe0xb9q8qiLsFr0=vr0=vr0dc8meaabaqaciaacaGaaeqabaqabeGadaaakeaadaqdaaqaaiabdcfaqjabdcfaqjabdAfawbaaaaa@3044@ A0 AC SEN SPC
AA 288 254 249 234 85% 94% 90% 91% 99%
AU 271 (239) 159 (149)      
UU 1090 NA 603 NA